Basic Information
Locus ID:
Chr11G000510
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000011 | 240285 | 241952 | + | Chr11G000510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 254 | 280 | 0.089 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 375 | 411 | 0.0027 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 250 | 549 | 4.12E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 231 | 550 | 3.7E-105 | IPR015943 |
| SMART | SM00320 | WD40_4 | 506 | 548 | 31.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 241 | 281 | 0.051 | IPR001680 |
| SMART | SM00320 | WD40_4 | 373 | 411 | 5.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 414 | 454 | 2.1 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 379 | 420 | 11.109979 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 68 | - | - |
| Coils | Coil | Coil | 39 | 73 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14050.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_004966308.1 | U3 small nucleolar RNA-associated protein 18 homolog [Setaria italica] | 0 |
| Q9FMU5 | U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g14050 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9T892 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_40969 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg16164, jg16165, jg37838 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13827 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000764, Ah029412 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g113920 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg58198, Sbi_jg58204, Sbi_jg58207, Sbi_jg58210 ... |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25809 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004671, GOSA_00004672 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54741, Sgl60043 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006998, gene:ENSEOMG00000021144 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2AG0000630, CQ.Regalona.r1.5AG0019890 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30026280, pistato.v30292650 |
| Apiaceae | Apium graveolens | 1 | Ag9G02082 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G019050 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103716117, gene-LOC120109746 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.3002.V1.1, AsparagusV1_04.1893.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G04510 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G14050.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013183m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g29950.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g048600.2N, BniB08g006730.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0170 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0167 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g09860, gene.Cymno05g13380 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0427s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g14500 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7384 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1380, evm.TU.LG06.1175 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007912 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2624, BH06.2428, CH06.2713 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0550690, gene-QOZ80_6BG0504250 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0492840.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_039042, gene-QYE76_039863, gene-QYE76_039864 ... |
| Poaceae | Oryza coarctata | 2 | Oco13G012040, Oco14G012800 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g41190.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_05G025100, gene-BS78_09G031400 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0300351, Pt_Chr0301979, Pt_Chr0601268, Pt_Chr0601270 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G022010, Chr11G000510 |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G342400, Tel2E01G342500, Tel5E01G687900 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2BG025750, gene_TRIDC5AG063040 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G439300.1.cds1, TraesCS5B02G442300.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb227850_P001, Zm00001eb227870_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-9577 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31131 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG01.1319, evm.TU.LG01.2687, evm.TU.LG02.34 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g16950 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1060, evm.TU.Scaffold_5_RagTag.1061 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11293 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10678 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10330 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.353 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9933 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19768 |
| Salicaceae | Populus euphratica | 2 | populus_peu15130, populus_peu32793 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609493 |
| Solanaceae | Solanum chilense | 1 | SOLCI002965300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002740 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.10631_chr07_-, gene_7726 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G0996, TC08G0401 |
| Zosteraceae | Zostera marina | 3 | Zosma01g07250.v3.1, Zosma03g04520.v3.1, Zosma03g30430.v3.1 |