Basic Information
Locus ID:
Chr10G022790
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000010 | 55536994 | 55543782 | - | Chr10G022790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 150 | 204 | 3.5E-18 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 330 | 370 | 2.6E-13 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 375 | 417 | 1.56E-10 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 462 | 516 | 3.7E-9 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 350 | 426 | 1.9E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 461 | 520 | 1.1E-11 | IPR013083 |
| SMART | SM00249 | PHD_3 | 461 | 517 | 1.4E-5 | IPR001965 |
| SMART | SM00249 | PHD_3 | 338 | 414 | 1.0E-4 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 336 | 416 | 10.050699 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 339 | 413 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 112 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021304442.1 | uncharacterized protein LOC8066402 [Sorghum bicolor] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811S2F2 | PHD-type domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS59321 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology