Basic Information
Locus ID:
Chr10G020600
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000010 | 53950550 | 53956073 | + | Chr10G020600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 69 | 343 | 5.55837E-80 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 945 | 1137 | 5.38555E-106 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 369 | 557 | 6.32247E-90 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 647 | 904 | 6.44922E-69 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 387 | 509 | 5.1E-21 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 946 | 1084 | 1.5E-25 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 68 | 322 | 1.1E-18 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 687 | 864 | 3.8E-23 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 923 | 1145 | 3.49E-58 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 364 | 577 | 7.17E-48 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 58 | 343 | 7.32E-35 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 685 | 911 | 4.19E-39 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 612 | 910 | 4.8E-44 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 913 | 1156 | 2.3E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 354 | 595 | 1.9E-63 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 47 | 353 | 4.9E-46 | IPR036640 |
| SMART | SM00382 | AAA_5 | 945 | 1130 | 3.2E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 396 | 557 | 7.6E-11 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 687 | 892 | 26.857275 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 369 | 580 | 20.194864 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 68 | 335 | 28.608465 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 901 | 1153 | 14.886101 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 482 | 496 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034569184.1 | ABC transporter C family member 3-like [Setaria viridis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6TE11 | ABC transporter C family member 3 OS=Setaria viridis OX=4556 GN=SEVIR_8G030300v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology