Basic Information
Locus ID:
Chr10G020250
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000010 | 53698880 | 53703644 | + | Chr10G020250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 240 | 288 | 6.64028E-17 | - |
| Pfam | PF12906 | RING-variant domain | 240 | 287 | 1.2E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 236 | 291 | 1.41E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 225 | 295 | 1.7E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 239 | 288 | 3.9E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 232 | 294 | 19.725155 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 483 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025813386.1 | uncharacterized protein LOC112890751 isoform X1 [Panicum hallii] | 0 |
| TrEMBL | A0A5J9TB02 | 3-hydroxyisobutyrate dehydrogenase OS=Eragrostis curvula OX=38414 GN=EJB05_41954 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology