Basic Information
Locus ID:
Chr10G019360
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000010 | 52826901 | 52832899 | - | Chr10G019360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 181 | 486 | 1.75374E-160 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 182 | 486 | 1.7E-41 | IPR001394 |
| Pfam | PF01753 | MYND finger | 83 | 120 | 6.0E-10 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 179 | 494 | 8.63E-85 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 81 | 124 | 7.32E-11 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 70 | 126 | 8.4E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 177 | 494 | 3.3E-89 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 182 | 489 | 48.543453 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 83 | 120 | 12.233541 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 83 | 120 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 183 | 198 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 781 | 801 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_034589899.1 | ubiquitin carboxyl-terminal hydrolase 19-like [Setaria viridis] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9TBL9 | MYND-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_41792 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology