halophFGD

Basic Information

Locus ID: Chr10G017290

Species & Taxonomic ID: Sporobolus alterniflorus & 29706

Genome Assembly: GWHCBIM00000000

Description: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
GWHCBIM00000010	50625409	50628060	+	Chr10G017290

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
0.00	0.00 Da	0.00	0.00	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	1	38	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	41	-	-

KEGG Pathway

KO Term:

K17302 (coatomer subunit beta')

Best hit

Source	Best Hit ID	Description
TAIR	AT1G52360.3	-
RefSeq	XP_035818245.1	putative coatomer beta subunit family protein isoform X5 [Zea mays]
Swiss-Prot	Q6H8D5	Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0209100 PE=2 SV=1
TrEMBL	C0PFR3	Coatomer_WDAD domain-containing protein OS=Zea mays OX=4577 PE=2 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg13528, jg25369, jg27197
Aizoaceae	Mesembryanthemum crystallinum	2	gene_26151, gene_26152
Amaranthaceae	Atriplex hortensis	3	Ah010724, Ah011445, Ah011446
Amaranthaceae	Beta vulgaris	1	BVRB_9g220570
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg11437, Sbi_jg46395
Amaranthaceae	Salicornia europaea	1	Seu_jg20716
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00005264, GOSA_00009274
Amaranthaceae	Suaeda glauca	5	Sgl43451, Sgl55890, Sgl61080, Sgl62060, Sgl66622
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000016355, gene:ENSEOMG00000019314 ... gene:ENSEOMG00000039774, gene:ENSEOMG00000051718
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7BG0010840, CQ.Regalona.r1.9AG0010770 ... CQ.Regalona.r1.9AG0013780, CQ.Regalona.r1.9BG0011620
Anacardiaceae	Pistacia vera	2	pistato.v30125810, pistato.v30125840
Apiaceae	Apium graveolens	5	Ag2G00566, Ag2G01700, Ag4G01326, Ag5G00835, Ag6G01454
Arecaceae	Cocos nucifera	2	COCNU_02G000460, COCNU_06G000870
Arecaceae	Phoenix dactylifera	3	gene-LOC103697512, gene-LOC103704604, gene-LOC103721627
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.2026.V1.1, AsparagusV1_03.2987.V1.1
Asteraceae	Flaveria trinervia	5	Ftri18G17233, Ftri1G02389, Ftri8G19123, Ftri9G15219 ... FtriNA10366
Brassicaceae	Arabidopsis thaliana	3	AT1G52360.2, AT1G79990.1, AT3G15980.5
Brassicaceae	Eutrema salsugineum	2	Thhalv10011217m.g.v1.0, Thhalv10020009m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g38970.v2.2, Sp3g14330.v2.2, Sp5g35770.v2.2
Brassicaceae	Brassica nigra	6	BniB04g057410.2N, BniB06g028370.2N, BniB06g051770.2N ... BniB07g003500.2N, BniB07g028600.2N, BniB07g053830.2N
Casuarinaceae	Casuarina equisetifolia	7	Ceq05G0228, Ceq05G0229, Ceq05G0230, Ceq05G0231, Ceq05G0232 ... Ceq05G0233, Ceq05G0239
Casuarinaceae	Casuarina glauca	3	Cgl05G0237, Cgl05G0241, Cgl05G0244
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g11780, gene.Cymno16g00580
Dunaliellaceae	Dunaliella salina	2	Dusal.0118s00002.v1.0, Dusal.0838s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g33060, gene.Thate06g15470
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-4534
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.375
Plantaginaceae	Plantago ovata	2	Pov_00015427, Pov_00024990
Plumbaginaceae	Limonium bicolor	5	Lb0G37653, Lb3G18460, Lb4G23246, Lb4G23247, Lb4G24604
Poaceae	Echinochloa crus-galli	9	AH06.205, AH06.2172, AH07.805, BH06.307, BH07.4009, BH07.930 ... CH06.2199, CH06.292, CH07.687
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_2AG0105840, gene-QOZ80_2BG0159250 ... gene-QOZ80_4AG0326750, gene-QOZ80_6AG0508440, gene-QOZ80_6BG0460640, gene-QOZ80_6BG0497370, gene-QOZ80_9BG0700790, gene-QOZ80_9BG0714850
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.3HG0218550.1, HORVU.MOREX.r3.3HG0218560.1 ... HORVU.MOREX.r3.5HG0439780.1, HORVU.MOREX.r3.6HG0576880.1, HORVU.MOREX.r3.7HG0648880.1
Poaceae	Lolium multiflorum	11	gene-QYE76_007481, gene-QYE76_007485, gene-QYE76_007486 ... gene-QYE76_007489, gene-QYE76_021529, gene-QYE76_027804, gene-QYE76_030605, gene-QYE76_030709, gene-QYE76_036868, gene-QYE76_036875, gene-QYE76_036883
Poaceae	Oryza coarctata	5	Oco03G005560, Oco04G005610, Oco11G002140, Oco11G012010 ... Oco12G002070
Poaceae	Oryza sativa	3	LOC_Os02g11830.2, LOC_Os02g11840.1, LOC_Os06g05180.3
Poaceae	Paspalum vaginatum	3	gene-BS78_04G082100, gene-BS78_10G035400 ... gene-BS78_10G179100
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0202040, Pt_Chr0401756, Pt_Chr0401777, Pt_Chr0401778 ... Pt_Chr0401790, Pt_Chr0401796, Pt_Chr0401800, Pt_Chr0402244, Pt_Chr0501230
Poaceae	Sporobolus alterniflorus	9	Chr06G032770, Chr0G015150, Chr10G017290, Chr11G005220 ... Chr11G023120, Chr14G001600, Chr15G024130, Chr18G011980, Chr21G000720
Poaceae	Thinopyrum elongatum	8	Tel3E01G021500, Tel3E01G153000, Tel4E01G144800 ... Tel6E01G349900, Tel7E01G1011300, Tel7E01G1011500, Tel7E01G1011600, Tel7E01G187700
Poaceae	Triticum dicoccoides	20	gene_TRIDC3BG000710, gene_TRIDC3BG001890 ... gene_TRIDC3BG070490, gene_TRIDC4AG058530, gene_TRIDC4AG067370, gene_TRIDC4AG067390, gene_TRIDC4AG068050, gene_TRIDC4BG014360, gene_TRIDC5AG008480, gene_TRIDC6AG025470-100890, gene_TRIDC6AG025470-62404, gene_TRIDC6BG031740, gene_TRIDC7AG010080, gene_TRIDC7AG075100, gene_TRIDC7AG075270, gene_TRIDC7AG075460, gene_TRIDC7BG072010, gene_TRIDC7BG074000, gene_TRIDC7BG075480, gene_TRIDC7BG076690
Poaceae	Triticum aestivum	18	TraesCS1D02G434700.1, TraesCS3A02G012700.1 ... TraesCS3B02G005000.1, TraesCS3B02G015000.1, TraesCS4A02G388200.2, TraesCS4B02G092000.1, TraesCS4D02G089000.1, TraesCS5D02G502400.1, TraesCS6A02G130600.1, TraesCS6A02G179300.1, TraesCS6B02G206500.2, TraesCS6D02G165800.1, TraesCS7A02G088600.3, TraesCS7A02G541100.1, TraesCS7B02G480400.1, TraesCS7D02G083900.1, TraesCS7D02G554800.1, TraesCSU02G189400.1
Poaceae	Zea mays	10	Zm00001eb195340_P001, Zm00001eb195370_P001 ... Zm00001eb195680_P001, Zm00001eb205430_P001, Zm00001eb240380_P004, Zm00001eb265360_P001, Zm00001eb270540_P002, Zm00001eb377270_P002, Zm00001eb386030_P003, Zm00001eb424470_P001
Poaceae	Zoysia japonica	4	nbis-gene-33409, nbis-gene-34693, nbis-gene-40386 ... nbis-gene-44018
Poaceae	Zoysia macrostachya	3	Zma_g12430, Zma_g15178, Zma_g29091
Portulacaceae	Portulaca oleracea	5	evm.TU.LG06.1186, evm.TU.LG07.1711, evm.TU.LG11.541 ... evm.TU.LG15.1499, evm.TU.LG22.1135
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g24360, gene.Posoc08g15220, gene.Posoc09g11420
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.60453.1, evm.TU.60454.1 ... evm.TU.Scaffold_10_RagTag.1257
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-1215, nbisL1-mrna-27857, nbisL1-mrna-6978
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10365, nbisL1-mrna-10715, nbisL1-mrna-5732
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-6425, nbisL1-mrna-6428, nbisL1-mrna-7905 ... nbisL1-mrna-8861
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000019l.762, evm.TU.utg000023l.163 ... evm.TU.utg000033l.581
Rhizophoraceae	Kandelia obovata	2	Maker00014791, Maker00018792
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-16380, nbisL1-mrna-18820, nbisL1-mrna-5230 ... nbisL1-mrna-7325
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-13166, nbisL1-mrna-18017, nbisL1-mrna-21262
Salicaceae	Populus euphratica	6	populus_peu02776, populus_peu12858, populus_peu12859 ... populus_peu33693, populus_peu33724, populus_peu33725
Solanaceae	Lycium barbarum	4	gene-LOC132598458, gene-LOC132603673, gene-LOC132633342 ... gene-LOC132634354
Solanaceae	Solanum chilense	4	SOLCI001215900, SOLCI001859400, SOLCI001859500 ... SOLCI005754900
Solanaceae	Solanum pennellii	4	gene-LOC107007027, gene-LOC107014066, gene-LOC107014070 ... gene-LOC107023332
Tamaricaceae	Reaumuria soongarica	2	STRG.21280_chr09_+, gene_10084
Tamaricaceae	Tamarix chinensis	3	TC05G0223, TC08G2071, TC10G1957
Zosteraceae	Zostera marina	9	Zosma04g03500.v3.1, Zosma05g02990.v3.1, Zosma06g08730.v3.1 ... Zosma06g30830.v3.1, Zosma435g00010.v3.1, Zosma555g00010.v3.1, Zosma555g00020.v3.1, Zosma644g00010.v3.1, Zosma869g00010.v3.1