Basic Information
Locus ID:
Chr10G016550
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
phosphatase 2A 55 kDa regulatory subunit B'
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000010 | 49711160 | 49720699 | + | Chr10G016550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 339 | 370 | 0.1 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 226 | 262 | 0.14 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 41 | 506 | 3.66E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 70 | 512 | 7.5E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 273 | 313 | 3.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 33 | 68 | 7.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 320 | 370 | 66.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 223 | 262 | 0.94 | IPR001680 |
| SMART | SM00320 | WD40_4 | 106 | 146 | 240.0 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 11 | 514 | 2.1E-195 | IPR000009 |
| ProSitePatterns | PS01025 | Protein phosphatase 2A regulatory subunit PR55 signature 2. | 232 | 246 | - | IPR018067 |
| ProSitePatterns | PS01024 | Protein phosphatase 2A regulatory subunit PR55 signature 1. | 106 | 120 | - | IPR018067 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 262 | 289 | 8.4E-158 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 375 | 400 | 8.4E-158 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 234 | 261 | 8.4E-158 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 319 | 346 | 8.4E-158 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 47 | 67 | 8.4E-158 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 401 | 427 | 8.4E-158 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 483 | 512 | 8.4E-158 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 122 | 150 | 8.4E-158 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 93 | 121 | 8.4E-158 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 347 | 374 | 8.4E-158 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 290 | 318 | 8.4E-158 | IPR000009 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 182 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.1 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_021305133.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X2 [Sorghum bicolor] | 0 |
| Q5Z8Z7 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0563300 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3L6PJ98 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Panicum miliaceum OX=4540 GN=C2845_PM10G14720 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology