Basic Information
Locus ID:
Chr10G013880
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000010 | 46394927 | 46396657 | - | Chr10G013880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 23 | 66 | 1.1E-4 | IPR001810 |
| SUPERFAMILY | SSF52058 | L domain-like | 437 | 524 | 7.74E-7 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 120 | 366 | 1.88E-24 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 72 | 1.96E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 21 | 58 | 2.2E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 78 | 379 | 4.3E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 380 | 531 | 4.4E-17 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 486 | 511 | 0.31 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 211 | 236 | 190.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 185 | 210 | 130.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 134 | 159 | 0.88 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 160 | 184 | 2.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 298 | 323 | 110.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 271 | 296 | 51.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021310368.1 | EIN3-binding F-box protein 2-like [Sorghum bicolor] | 0 |
| TrEMBL | A0A5J9TFQ2 | F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_43645 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.375.V1.1 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g10740 |
| Poaceae | Echinochloa crus-galli | 1 | BH03.2836 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0482630 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G013880, Chr10G013900, Chr10G013910, Chr11G008410 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG059180 |
| Poaceae | Zea mays | 2 | Zm00001eb241470_P001, Zm00001eb319400_P001 |