Basic Information
Locus ID:
Chr10G013160
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
CPK24
Description:
EF hand
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000010 | 45266342 | 45268645 | - | Chr10G013160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 332 | 407 | 1.26359E-12 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 57 | 285 | 1.5E-35 | IPR000719 |
| Pfam | PF00036 | EF hand | 384 | 407 | 1.9E-6 | IPR002048 |
| Pfam | PF13202 | EF hand | 336 | 355 | 0.0013 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 57 | 296 | 2.97E-47 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 314 | 408 | 7.11E-21 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 55 | 105 | 1.8E-6 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 378 | 412 | 6.5E-7 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 303 | 325 | 7.9E-16 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 326 | 376 | 7.9E-16 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 115 | 295 | 3.8E-41 | - |
| SMART | SM00054 | efh_1 | 381 | 409 | 1.4E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 332 | 360 | 0.15 | IPR002048 |
| SMART | SM00220 | serkin_6 | 53 | 285 | 5.2E-34 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 377 | 412 | 14.680779 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 53 | 285 | 25.629902 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 328 | 363 | 14.150764 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 341 | 353 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 154 | 166 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 59 | 82 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 390 | 402 | - | IPR018247 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18890.1 | calcium-dependent protein kinase 1. encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro. | 0 |
| RefSeq | XP_004957332.1 | calcium-dependent protein kinase 22 [Setaria italica] | 0 |
| Q69IM9 | Calcium-dependent protein kinase 22 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK22 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J9TC25 | Calcium-dependent protein kinase 24 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_42368 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Chr10G013160.