Basic Information
Locus ID:
Chr10G012790
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000010 | 44693593 | 44694524 | - | Chr10G012790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00083 | Sugar (and other) transporter | 2 | 252 | 3.4E-63 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 1 | 237 | 3.01E-33 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 1 | 258 | 2.7E-60 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 1 | 279 | 25.329363 | IPR020846 |
| ProSitePatterns | PS00217 | Sugar transport proteins signature 2. | 30 | 55 | - | IPR005829 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 217 | 234 | - | IPR005829 |
| PRINTS | PR00171 | Sugar transporter signature | 174 | 184 | 4.5E-7 | IPR003663 |
| PRINTS | PR00171 | Sugar transporter signature | 25 | 44 | 4.5E-7 | IPR003663 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19940.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_039806513.1 | sugar transport protein MST6-like [Panicum virgatum] | 0 |
| Q6Z401 | Sugar transport protein MST6 OS=Oryza sativa subsp. japonica OX=39947 GN=MST6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5VNE4 | Sugar carrier protein C OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0012343 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg8121 |
| Apiaceae | Apium graveolens | 1 | Ag2G00720 |
| Poaceae | Echinochloa crus-galli | 1 | BH01.3244 |
| Poaceae | Oryza coarctata | 2 | Oco13G003610, Oco17G002020 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G012790 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6BG023930 |
| Zosteraceae | Zostera marina | 2 | Zosma04g05630.v3.1, Zosma04g05650.v3.1 |