Basic Information
Locus ID:
Chr10G009330
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000010 | 37513112 | 37515641 | + | Chr10G009330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 279 | 326 | 2.0E-7 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 350 | 388 | 4.77E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 191 | 245 | 2.3E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 285 | 334 | 9.18E-6 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 336 | 402 | 9.2E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 283 | 6.6E-16 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 338 | 397 | 0.78 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 269 | 333 | 0.013 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 190 | 403 | 21.147985 | IPR044066 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004959481.1 | probable E3 ubiquitin-protein ligase RNF144A-A [Setaria italica] | 0 |
| TrEMBL | A0A3L6T8A7 | RING-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM03G35510 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.2028, BH03.2377, CH03.2352, CH03.2353 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0481110.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005352, gene-QYE76_005438, gene-QYE76_015362 |
| Poaceae | Oryza coarctata | 2 | Oco17G005570, Oco18G005680 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g26470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G192700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G009320, Chr10G009330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G354700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG034770, gene_TRIDC5BG036480 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G215600.1, TraesCS5B02G214100.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19790 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32591 |