Basic Information
Locus ID:
Chr10G009320
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000010 | 37505994 | 37510867 | + | Chr10G009320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 372 | 420 | 9.7E-7 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 284 | 338 | 1.92E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 444 | 481 | 3.35E-10 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 431 | 497 | 3.1E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 281 | 376 | 1.5E-17 | IPR013083 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 283 | 497 | 22.338032 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 287 | 332 | 8.771522 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 305 | 314 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025801584.1 | probable E3 ubiquitin-protein ligase RNF217 [Panicum hallii] | 0 |
| Q8BKD6 | E3 ubiquitin-protein ligase RNF144B OS=Mus musculus OX=10090 GN=Rnf144b PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9TEF5 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_43162 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.2028, BH03.2377, CH03.2352, CH03.2353 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0481110.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005352, gene-QYE76_005438, gene-QYE76_015362 |
| Poaceae | Oryza coarctata | 2 | Oco17G005570, Oco18G005680 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g26470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G192700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G009320, Chr10G009330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G354700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG034770, gene_TRIDC5BG036480 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G215600.1, TraesCS5B02G214100.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19790 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32591 |