Basic Information
Locus ID:
Chr10G007810
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000010 | 33431498 | 33437768 | - | Chr10G007810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 216 | 370 | 6.05943E-71 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 4 | 173 | 2.2675E-46 | - |
| Pfam | PF00190 | Cupin | 27 | 154 | 1.5E-18 | IPR006045 |
| Pfam | PF00190 | Cupin | 214 | 356 | 6.6E-18 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 38 | 362 | 9.72E-41 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 24 | 179 | 3.8E-26 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 213 | 375 | 2.1E-45 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 4 | 157 | 4.8E-19 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 213 | 357 | 5.3E-8 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 312 | 330 | 5.5E-11 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 229 | 249 | 5.5E-11 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 334 | 351 | 5.5E-11 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 294 | 309 | 5.5E-11 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 276 | 292 | 5.5E-11 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_034569400.1 | 11S globulin seed storage protein 2-like [Setaria viridis] | 0 |
| P07728 | Glutelin type-A 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GLUA1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9TF64 | 11S seed storage protein OS=Eragrostis curvula OX=38414 GN=EJB05_43444 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology