halophFGD

Basic Information

Locus ID: Chr10G005950

Species & Taxonomic ID: Sporobolus alterniflorus & 29706

Genome Assembly: GWHCBIM00000000

Description: nuclease activity

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
GWHCBIM00000010	28091226	28093185	+	Chr10G005950

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
0.00	0.00 Da	0.00	0.00	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	85	134	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	101	125	-	-

KEGG Pathway

KO Term:

K01011 (thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2])

Pathway:

ko00270 (Cysteine and methionine metabolism) map00270 (Cysteine and methionine metabolism) ko00920 (Sulfur metabolism) map00920 (Sulfur metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko04122 (Sulfur relay system) map04122 (Sulfur relay system)

Reaction:

R01931 (Thiosulfate + Cyanide ion <=> Sulfite + Thiocyanate) R03105 (Mercaptopyruvate + Thioredoxin <=> Hydrogen sulfide + Pyruvate + Thioredoxin disulfide)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_044954874.1	L10-interacting MYB domain-containing protein-like [Hordeum vulgare subsp. vulgare]	0
TrEMBL	A0A0A9TM27	Myb_DNA-bind_3 domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Brassica nigra	1	BniB03g058380.2N
Poaceae	Echinochloa crus-galli	24	AH01.4755, AH02.2722, AH04.1015, AH05.1286, AH05.1766 ... AH05.3395, AH06.1407, AH06.2180, AH06.2896, AH07.1213, AH08.726, AH08.757, BH01.4630, BH02.1085, BH02.860, BH03.964, BH05.2905, BH09.1361, BH09.543, CH03.281, CH06.2055, CH07.1524, CH09.1172, Contig804.4
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_1BG0063290
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.2HG0136190.1
Poaceae	Oryza sativa	1	LOC_Os05g46770.1
Poaceae	Paspalum vaginatum	13	gene-BS78_01G057300, gene-BS78_02G211300, gene-BS78_K021000 ... gene-BS78_02G244700, gene-BS78_03G068800, gene-BS78_03G111000, gene-BS78_04G052500, gene-BS78_09G135500, gene-BS78_10G157900, gene-BS78_10G182500, gene-BS78_10G255000, gene-BS78_K062300, gene-BS78_K248400
Poaceae	Sporobolus alterniflorus	18	Chr01G028140, Chr02G020120, Chr02G020680, Chr03G014060 ... Chr06G019610, Chr06G022200, Chr07G020210, Chr08G007320, Chr08G012710, Chr08G019860, Chr0G012320, Chr10G001980, Chr10G005950, Chr11G014010, Chr12G009670, Chr13G018520, Chr25G011960, Chr25G013260
Poaceae	Thinopyrum elongatum	1	Tel3E01G440600
Poaceae	Triticum dicoccoides	3	gene_TRIDC2AG030720, gene_TRIDC2AG037920 ... gene_TRIDC6AG004550
Poaceae	Zea mays	4	Zm00001eb009750_P001, Zm00001eb012990_P001 ... Zm00001eb019500_P001, Zm00001eb424370_P001
Poaceae	Zoysia japonica	1	nbis-gene-21483
Poaceae	Zoysia macrostachya	1	Zma_g10439