Basic Information
Locus ID:
Chr10G001070
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
GTPase-activator protein for Rho-like GTPases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000010 | 1286500 | 1298199 | + | Chr10G001070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 52 | 151 | 8.13411E-12 | - |
| CDD | cd00159 | RhoGAP | 207 | 344 | 7.4114E-28 | - |
| Pfam | PF00620 | RhoGAP domain | 207 | 350 | 2.2E-26 | IPR000198 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 579 | 660 | 8.9E-19 | IPR025757 |
| Pfam | PF00169 | PH domain | 51 | 155 | 6.3E-13 | IPR001849 |
| SUPERFAMILY | SSF50729 | PH domain-like | 44 | 155 | 4.38E-18 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 204 | 401 | 3.34E-31 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 177 | 399 | 6.6E-36 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 41 | 157 | 5.1E-17 | IPR011993 |
| SMART | SM00324 | RhoGAP_3 | 204 | 394 | 1.8E-22 | IPR000198 |
| SMART | SM00233 | PH_update | 50 | 158 | 5.8E-17 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 196 | 397 | 27.033533 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 49 | 156 | 16.4114 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 805 | 834 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 805 | 822 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 487 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 519 | - | - |
| Coils | Coil | Coil | 785 | 812 | - | - |
| Coils | Coil | Coil | 137 | 157 | - | - |
| Coils | Coil | Coil | 569 | 610 | - | - |
| Coils | Coil | Coil | 636 | 656 | - | - |
| Coils | Coil | Coil | 537 | 564 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24580.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a Rho GTPase-activating protein that interacts with ROP1 (a Rho GTPase) and regulates pollen tube development. This protein can be observed at the apical tip of growing pollen tubes and on endocytic vesicles traveling to this region of the pollen tube. | 0 |
| RefSeq | XP_025812292.1 | rho GTPase-activating protein REN1-like isoform X1 [Panicum hallii] | 0 |
| F4JQZ3 | Rho GTPase-activating protein REN1 OS=Arabidopsis thaliana OX=3702 GN=REN1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9SQL6 | Rho GTPase-activating protein REN1 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_53344 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology