Basic Information
Locus ID:
Chr10G000920
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000010 | 1018470 | 1025324 | + | Chr10G000920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 413 | 468 | 2.4E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 595 | 644 | 6.8E-16 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 653 | 707 | 1.19E-11 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 743 | 801 | 1.28E-8 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 904 | 1001 | 6.18E-8 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 647 | 739 | 6.1E-14 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 745 | 806 | 4.9E-12 | IPR013083 |
| SMART | SM00249 | PHD_3 | 661 | 701 | 6.6E-6 | IPR001965 |
| SMART | SM00249 | PHD_3 | 747 | 804 | 0.0016 | IPR001965 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 851 | 1021 | 9.313385 | IPR000182 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 662 | 700 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 748 | 803 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 324 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | NP_001336837.1 | uncharacterized protein LOC100274990 [Zea mays] | 0 |
| TrEMBL | A0A5J9SK28 | N-acetyltransferase domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_55330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology