Basic Information
Locus ID:
Chr10G000170
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000010 | 81687 | 83703 | - | Chr10G000170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 230 | 272 | 4.11057E-16 | - |
| Pfam | PF13639 | Ring finger domain | 230 | 272 | 3.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 230 | 276 | 4.64E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 186 | 276 | 4.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 231 | 271 | 2.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 231 | 272 | 12.725326 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 183 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63530.1 | RING/U-box superfamily protein. Encodes a novel E3 ubiquitin ligase that acts as a central negative regulator of Arabidopsis floral organ size. Organ size is limited by restricting the period of proliferative growth, rather than the rate of growth and appears to act in a novel pathway, independent of ANT and JAG. Both mRNA and protein are expressed in all actively growing regions of the plant and the vasculature and the protein is rapidly turned over by proteasome-mediated degradation. | 0 |
| RefSeq | XP_039842180.1 | E3 ubiquitin ligase BIG BROTHER-related-like [Panicum virgatum] | 0 |
| Q8L649 | E3 ubiquitin-protein ligase BIG BROTHER OS=Arabidopsis thaliana OX=3702 GN=BB PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9J2E0 | RING-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.462, BH06.139, CH06.132 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0506750, gene-QOZ80_6BG0458660 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0642210.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_027570 |
| Poaceae | Oryza coarctata | 2 | Oco11G001120, Oco12G001040 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g03580.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G018500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0401902, Pt_Chr0401921 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr10G000090, Chr10G000170, Chr11G024190, Chr14G000910 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G119000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG064410, gene_TRIDC7AG005680 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G441400.1, TraesCS7A02G054700.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb269300_P003, Zm00001eb378700_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40270, nbis-gene-51189 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29013, Zma_g31255 |