Basic Information
Locus ID:
Chr0G033910
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000057 | 97235 | 104511 | - | Chr0G033910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 263 | 379 | 3.74103E-20 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 269 | 394 | 3.5E-8 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 151 | 405 | 1.37E-22 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 523 | 584 | 5.8E-7 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 149 | 409 | 8.4E-28 | IPR023214 |
| SMART | SM00577 | forpap2 | 245 | 388 | 2.2E-8 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 548 | 585 | 8.955118 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 154 | 401 | 16.992416 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 508 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_004970633.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Setaria italica] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2T7DEA0 | protein-serine/threonine phosphatase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G085500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology