Basic Information
Locus ID:
Chr0G029140
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000169 | 128001 | 132640 | + | Chr0G029140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 25 | 226 | 1.34027E-104 | - |
| CDD | cd18794 | SF2_C_RecQ | 227 | 360 | 7.1761E-61 | - |
| Pfam | PF16124 | RecQ zinc-binding | 363 | 449 | 7.0E-10 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 245 | 349 | 9.2E-17 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 41 | 206 | 1.5E-19 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 78 | 372 | 4.64E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 10 | 226 | 9.7E-89 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 227 | 466 | 1.7E-63 | IPR027417 |
| SMART | SM00487 | ultradead3 | 33 | 235 | 1.9E-29 | IPR014001 |
| SMART | SM00490 | helicmild6 | 270 | 351 | 2.6E-23 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 26 | 450 | 1.3E-141 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 45 | 219 | 23.725199 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 239 | 395 | 18.744858 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 737 | 751 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 722 | 736 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 758 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_025805602.1 | ATP-dependent DNA helicase Q-like 3 isoform X1 [Panicum hallii] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3GU57 | ATP-dependent DNA helicase OS=Panicum hallii OX=206008 GN=PAHAL_1G421300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology