Basic Information
Locus ID:
Chr0G028140
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000118 | 139632 | 149346 | - | Chr0G028140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 103 | 140 | 1.5E-8 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 331 | 635 | 1.4E-44 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 327 | 641 | 1.06E-83 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 99 | 142 | 8.37E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 324 | 648 | 6.1E-90 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 93 | 143 | 5.5E-12 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 103 | 140 | 11.853289 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 331 | 638 | 50.360241 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 332 | 347 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 103 | 140 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 657 | 679 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_004957062.1 | ubiquitin carboxyl-terminal hydrolase 17 [Setaria italica] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TF20 | USP domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_43369 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology