Basic Information
Locus ID:
Chr0G027460
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
ribosomal protein L40
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000294 | 8557 | 10440 | + | Chr0G027460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 53 | 85 | 1.3E-10 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 53 | 87 | 1.61E-11 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 33 | 88 | 2.5E-15 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 54 | 87 | 12.182546 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 43 | 63 | 2.0E-10 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 64 | 85 | 2.0E-10 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 44 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36170.1 | Ubiquitin supergroup;Ribosomal protein L40e. | 0 |
| RefSeq | XP_050884103.1 | ubiquitin-like [Pisum sativum] | 0 |
| P69310 | Ubiquitin OS=Avena sativa OX=4498 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7R400 | Polyubiquitin OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Chr0G027460.