Basic Information
Locus ID:
Chr0G024230
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000043 | 778618 | 786441 | - | Chr0G024230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 68 | 304 | 1.1E-92 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 69 | 304 | 1.52E-40 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 290 | 344 | 1.96E-5 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 95 | 304 | 1.7E-71 | IPR027417 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 257 | 303 | 13.851682 | IPR020587 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 23 | 5.0 | - |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 96 | 248 | 26.597635 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 269 | 277 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 226 | 255 | 1.0E-46 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 154 | 183 | 1.0E-46 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 188 | 217 | 1.0E-46 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 266 | 294 | 1.0E-46 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 383 | - | - |
| Coils | Coil | Coil | 327 | 347 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_004970942.1 | DNA repair protein recA homolog 3, mitochondrial [Setaria italica] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0A9P709 | IDP355 OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology