Basic Information
Locus ID:
Chr0G019460
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000197 | 172554 | 173283 | + | Chr0G019460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 99 | 161 | 5.95462E-21 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 22 | 84 | 9.1E-12 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 98 | 160 | 1.4E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 9 | 161 | 1.38E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 10 | 91 | 9.2E-20 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 92 | 167 | 1.3E-23 | - |
| SMART | SM00054 | efh_1 | 59 | 87 | 0.0058 | IPR002048 |
| SMART | SM00054 | efh_1 | 23 | 51 | 4.1E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 99 | 127 | 1.9E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 135 | 163 | 4.5E-7 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 55 | 90 | 10.831213 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 19 | 54 | 14.597092 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 95 | 130 | 14.708673 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 131 | 166 | 13.007053 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 68 | 80 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 144 | 156 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 108 | 120 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 32 | 44 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_039803393.1 | probable calcium-binding protein CML14 [Panicum virgatum] | 0 |
| Q6L5F4 | Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 GN=CML14 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A9IJR1 | Calcium-binding protein CML14 OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology