Basic Information
Locus ID:
Chr0G018720
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000210 | 142258 | 145794 | - | Chr0G018720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 791 | 1059 | 7.85001E-92 | - |
| Pfam | PF00560 | Leucine Rich Repeat | 198 | 219 | 1.6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 573 | 632 | 2.7E-10 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 788 | 984 | 1.8E-41 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 69 | 1.4E-10 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 29 | 278 | 1.19E-49 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 201 | 665 | 3.33E-55 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 765 | 1056 | 3.64E-73 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 474 | 685 | 1.1E-49 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 296 | 472 | 5.0E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 189 | 1.2E-40 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 190 | 289 | 3.1E-22 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 747 | 860 | 7.9E-27 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 861 | 1065 | 1.5E-55 | - |
| SMART | SM00220 | serkin_6 | 785 | 1063 | 2.4E-32 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 170 | 194 | 4.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 571 | 594 | 330.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 595 | 618 | 0.56 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 196 | 220 | 310.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 244 | 268 | 39.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 619 | 642 | 27.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 123 | 146 | 24.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 785 | 1067 | 39.127872 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 597 | 620 | 7.011191 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 791 | 813 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 905 | 917 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02130.2 | - | 0 |
| RefSeq | XP_039792690.1 | LRR receptor-like serine/threonine-protein kinase RPK2 [Panicum virgatum] | 0 |
| Q9S7I6 | LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana OX=3702 GN=RPK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0VSP2 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_2NG577400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology