Basic Information
Locus ID:
Chr0G018110
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000231 | 140914 | 146615 | + | Chr0G018110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 126 | 160 | 1.8E-5 | IPR001680 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 62 | 205 | 3.49E-17 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 56 | 230 | 3.2E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 181 | 224 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 123 | 162 | 1.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 73 | 112 | 89.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 130 | 160 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 130 | 160 | 8.755605 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00090.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_025793920.1 | transducin beta-like protein 2 isoform X3 [Panicum hallii] | 0 |
| Q9Y4P3 | Transducin beta-like protein 2 OS=Homo sapiens OX=9606 GN=TBL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6TJR9 | Transducin beta-like protein 2 OS=Panicum miliaceum OX=4540 GN=C2845_PM01G49440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Sporobolus alterniflorus | 2 | Chr0G018110, Chr22G017340 |