Basic Information
Locus ID:
Chr0G012030
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
DEAD/DEAH box helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000377 | 61565 | 69930 | - | Chr0G012030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 649 | 781 | 7.72141E-73 | - |
| CDD | cd17920 | DEXHc_RecQ | 448 | 648 | 4.51396E-101 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 462 | 628 | 1.2E-19 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 1019 | 1085 | 5.1E-13 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 672 | 771 | 4.7E-17 | IPR001650 |
| Pfam | PF09382 | RQC domain | 869 | 986 | 2.3E-19 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 783 | 862 | 2.7E-16 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 428 | 790 | 3.55E-43 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 647 | 912 | 1.02E-58 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1015 | 1091 | 1.46E-14 | IPR010997 |
| Gene3D | G3DSA:1.10.10.10 | - | 866 | 986 | 1.2E-17 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1009 | 1095 | 7.9E-20 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 649 | 865 | 4.3E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 423 | 648 | 2.9E-92 | IPR027417 |
| SMART | SM00341 | hrdc7 | 1013 | 1095 | 2.4E-8 | IPR002121 |
| SMART | SM00956 | RQC_2 | 871 | 983 | 5.8E-18 | IPR018982 |
| SMART | SM00487 | ultradead3 | 456 | 657 | 1.3E-32 | IPR014001 |
| SMART | SM00490 | helicmild6 | 691 | 772 | 4.3E-27 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 452 | 922 | 6.8E-167 | IPR004589 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 681 | 723 | 8.846776 | IPR001763 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 468 | 641 | 22.970711 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 666 | 824 | 19.571438 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1013 | 1095 | 17.148975 | IPR002121 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 580 | 589 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1088 | 1132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 364 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_034597887.1 | ATP-dependent DNA helicase Q-like 4A [Setaria viridis] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6RSJ5 | DNA helicase OS=Panicum miliaceum OX=4540 GN=C2845_PM11G14120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology