Basic Information
Locus ID:
Chr0G011210
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Polyribonucleotide nucleotidyltransferase, RNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000148 | 207820 | 211571 | + | Chr0G011210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11364 | RNase_PH_PNPase_2 | 7 | 207 | 1.62553E-122 | - |
| Pfam | PF01138 | 3' exoribonuclease family, domain 1 | 7 | 113 | 5.1E-13 | IPR001247 |
| Pfam | PF00575 | S1 RNA binding domain | 279 | 350 | 2.4E-12 | IPR003029 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 268 | 354 | 1.06E-17 | IPR012340 |
| SUPERFAMILY | SSF55666 | Ribonuclease PH domain 2-like | 107 | 208 | 3.76E-23 | IPR036345 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 7 | 114 | 4.35E-27 | IPR020568 |
| Gene3D | G3DSA:2.40.50.140 | - | 279 | 352 | 5.4E-21 | - |
| Gene3D | G3DSA:3.30.230.70 | - | 5 | 218 | 1.4E-86 | IPR027408 |
| SMART | SM00316 | S1_6 | 280 | 350 | 6.4E-19 | IPR022967 |
| SMART | SM00316 | S1_6 | 514 | 577 | 0.025 | IPR022967 |
| ProSiteProfiles | PS50126 | S1 domain profile. | 282 | 350 | 17.501295 | IPR003029 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 461 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14580.1 | polyribonucleotide nucleotidyltransferase, putative. | 0 |
| RefSeq | XP_034601742.1 | polyribonucleotide nucleotidyltransferase 2, mitochondrial [Setaria viridis] | 0 |
| Q6KAI0 | Polyribonucleotide nucleotidyltransferase 2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=PNP2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835FQ70 | polyribonucleotide nucleotidyltransferase OS=Digitaria exilis OX=1010633 GN=HU200_007490 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17778, jg40385 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9801 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016421 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40668, Sbi_jg50675 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2229 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016587 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl44071, Sgl44073, Sgl48837, Sgl48838 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000035234 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8AG0011440 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30022740 |
| Apiaceae | Apium graveolens | 1 | Ag9G00462 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G000400 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711579 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.711.V1.1, AsparagusV1_09.1432.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G02407 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G14580.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012572m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g29450.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g048170.2N, BniB08g007020.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1854 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1935 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g07460 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1098s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g15940 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.331 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027857 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34570 |
| Poaceae | Echinochloa crus-galli | 2 | AH07.2622, CH07.2504 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0137560, gene-QOZ80_2BG0193190 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0595200.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_023634 |
| Poaceae | Oryza coarctata | 2 | Oco03G015400, Oco04G016040 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g40460.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G198400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204177, Pt_Chr0204677 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr09G025780, Chr0G011210, Chr12G023980, Chr13G007380 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G431400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG034660, gene_TRIDC6BG041310 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G228100.1, TraesCS6B02G253600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb247190_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-9473 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13902 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG05.1564, evm.TU.LG07.1233, evm.TU.LG20.795 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g05760 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1907 |
| Rhizophoraceae | Carallia pectinifolia | 7 | nbisL1-mrna-2354, nbisL1-mrna-2364, nbisL1-mrna-2368 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6759 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3076 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.75 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002093 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12047 |
| Salicaceae | Populus euphratica | 1 | populus_peu01056 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621839 |
| Solanaceae | Solanum chilense | 1 | SOLCI001041000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008916 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14705 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3599 |
| Zosteraceae | Zostera marina | 1 | Zosma06g07070.v3.1 |