Basic Information
Locus ID:
Chr0G010140
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Domain of unknown function (DUF4283)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000474 | 384019 | 393741 | - | Chr0G010140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 545 | 671 | 4.18076E-29 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 388 | 514 | 2.4E-16 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 556 | 652 | 2.6E-12 | IPR001650 |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 60 | 199 | 1.4E-15 | IPR025558 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 409 | 676 | 1.28E-34 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 537 | 700 | 8.4E-30 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 319 | 536 | 3.5E-35 | IPR027417 |
| SMART | SM00487 | ultradead3 | 361 | 544 | 4.9E-17 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 562 | 701 | 12.480772 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 342 | 370 | 8.745985 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 371 | 530 | 19.028509 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 316 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.3 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_002451790.1 | eukaryotic initiation factor 4A-1 [Sorghum bicolor] | 0 |
| Q0E2Q3 | Putative eukaryotic initiation factor 4A-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0221300 PE=3 SV=2 | 0 | |
| TrEMBL | A0A5J9VAY9 | DUF4283 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_24901 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology