Basic Information
Locus ID:
Chr0G006700
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000234 | 2083022 | 2084661 | + | Chr0G006700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14624 | VWA / Hh protein intein-like | 335 | 405 | 3.7E-11 | IPR032838 |
| Pfam | PF13519 | von Willebrand factor type A domain | 59 | 133 | 1.3E-9 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 55 | 129 | 7.65E-13 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 58 | 141 | 5.7E-14 | IPR036465 |
| SMART | SM00327 | VWA_4 | 56 | 225 | 9.8E-4 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 58 | 141 | 10.129591 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 263 | - | - |
| Coils | Coil | Coil | 284 | 304 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_015618733.1 | E3 ubiquitin-protein ligase WAV3 [Oryza sativa Japonica Group] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A3CGW2 | Os12g0431700 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0431700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology