Basic Information
Locus ID:
Chr0G004600
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000260 | 6411 | 14010 | - | Chr0G004600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 709 | 864 | 6.53819E-64 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 244 | 863 | 5.0E-78 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 242 | 865 | 8.83E-106 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 234 | 464 | 6.6E-63 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 674 | 875 | 1.8E-57 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 244 | 866 | 54.566029 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 245 | 260 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 808 | 825 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 581 | 605 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 581 | 620 | - | - |
| Coils | Coil | Coil | 865 | 876 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_039793420.1 | ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Panicum virgatum] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8T0VG34 | Ubiquitin carboxyl-terminal hydrolase OS=Panicum virgatum OX=38727 GN=PVAP13_2NG043700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology