Basic Information
Locus ID:
Chr0G003660
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000272 | 548882 | 557039 | + | Chr0G003660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 197 | 332 | 8.32865E-56 | - |
| CDD | cd17920 | DEXHc_RecQ | 2 | 196 | 5.28136E-90 | - |
| Pfam | PF09382 | RQC domain | 400 | 496 | 2.4E-21 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 335 | 396 | 8.0E-12 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 216 | 322 | 3.8E-20 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 16 | 174 | 9.5E-19 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 545 | 610 | 1.2E-10 | IPR002121 |
| Pfam | PF14493 | Helix-turn-helix domain | 657 | 752 | 8.5E-16 | IPR029491 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 195 | 444 | 3.32E-54 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 542 | 620 | 4.36E-14 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 9 | 339 | 5.95E-37 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 539 | 627 | 2.2E-13 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 398 | 523 | 3.7E-34 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 197 | 397 | 1.7E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 195 | 1.0E-68 | IPR027417 |
| SMART | SM00490 | helicmild6 | 242 | 323 | 1.4E-26 | IPR001650 |
| SMART | SM00487 | ultradead3 | 10 | 205 | 1.9E-29 | IPR014001 |
| SMART | SM00956 | RQC_2 | 403 | 507 | 1.4E-19 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 5 | 455 | 2.7E-148 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 213 | 377 | 18.515804 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 22 | 189 | 23.09017 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 542 | 622 | 15.505728 | IPR002121 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_025802573.1 | uncharacterized protein LOC112881883 isoform X1 [Panicum hallii] | 0 |
| Q9CL21 | ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain Pm70) OX=272843 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J9SQD2 | ATP-dependent DNA helicase OS=Eragrostis curvula OX=38414 GN=EJB05_53381 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology