HalophFGD

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Basic Information
Locus ID: Chr0G002930
Species & Taxonomic ID: Sporobolus alterniflorus & 29706
Genome Assembly: GWHCBIM00000000
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
GWHCBIM00000273 711653 722970 - Chr0G002930
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
0.00 0.00 Da 0.00 0.00 0.00
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF52058 L domain-like 115 263 9.86E-6 -
Best hit
Source Best Hit ID Description E-value
RefSeq XP_039797056.1 uncharacterized protein LOC120662046 isoform X1 [Panicum virgatum] 0
TrEMBL A0A8T0VRG9 F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_2NG576766 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 7 AH03.3902, AH03.3918, AH03.3919, BH03.4191, BH03.4208 ...
CH07.287, Contig181.19
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_2AG0105390, gene-QOZ80_2BG0158860 ...
gene-QOZ80_7BG0611060, gene-QOZ80_8BG0652150
Poaceae Hordeum vulgare 7 HORVU.MOREX.r3.2HG0112990.2, HORVU.MOREX.r3.5HG0531720.1 ...
HORVU.MOREX.r3.2HG0119130.1.CDS1, HORVU.MOREX.r3.5HG0531850.1, HORVU.MOREX.r3.5HG0531930.1, HORVU.MOREX.r3.5HG0531960.1, HORVU.MOREX.r3.5HG0532100.1
Poaceae Lolium multiflorum 13 gene-QYE76_001376, gene-QYE76_035379, gene-QYE76_038799 ...
gene-QYE76_038947, gene-QYE76_039227, gene-QYE76_046284, gene-QYE76_046322, gene-QYE76_060244, gene-QYE76_060246, gene-QYE76_060247, gene-QYE76_060269, gene-QYE76_060272, gene-QYE76_060273
Poaceae Oryza coarctata 6 Oco05G005810, Oco05G005830, Oco06G005980, Oco13G014200 ...
Oco13G014520, Oco14G015090
Poaceae Oryza sativa 2 LOC_Os07g45010.1, LOC_Os07g45050.1
Poaceae Paspalum vaginatum 4 gene-BS78_02G373000, gene-BS78_05G160500, gene-BS78_K157300 ...
gene-BS78_K157400
Poaceae Puccinellia tenuiflora 20 Pt_Chr0105210, Pt_Chr0106234, Pt_Chr0106236, Pt_Chr0106238 ...
Pt_Chr0106239, Pt_Chr0106242, Pt_Chr0106247, Pt_Chr0106249, Pt_Chr0106252, Pt_Chr0106261, Pt_Chr0106266, Pt_Chr0106277, Pt_Chr0106345, Pt_Chr0106378, Pt_Chr0201295, Pt_Chr0301122, Pt_Chr0304904, Pt_Chr0305530, Pt_Ctg00080, Pt_Ctg00084
Poaceae Sporobolus alterniflorus 2 Chr0G002930, Chr27G016370
Poaceae Thinopyrum elongatum 14 Tel2E01G236700, Tel2E01G236800, Tel2E01G288000 ...
Tel2E01G288900, Tel2E01G972700, Tel5E01G818500, Tel5E01G819100, Tel5E01G820600, Tel5E01G820700, Tel5E01G821400, Tel5E01G821600, Tel5E01G822100, Tel5E01G822300, Tel5E01G824800
Poaceae Triticum dicoccoides 16 gene_TRIDC2AG013140, gene_TRIDC2AG017730 ...
gene_TRIDC2AG078710, gene_TRIDC2BG021490, gene_TRIDC4AG052070, gene_TRIDC4AG052220, gene_TRIDC4AG052290, gene_TRIDC5AG025170, gene_TRIDC5BG078190, gene_TRIDC5BG078340, gene_TRIDC5BG078380, gene_TRIDC5BG078500, gene_TRIDC5BG078510, gene_TRIDC5BG078530, gene_TRIDC5BG078540, gene_TRIDC7AG054630
Poaceae Triticum aestivum 32 TraesCS2A02G142200.1, TraesCS2A02G586000.1 ...
TraesCS2B02G128000.1, TraesCS2B02G128200.1, TraesCS2B02G167400.1, TraesCS2B02G597100.1, TraesCS2B02G597200.1, TraesCS2D02G110200.1, TraesCS2D02G110300.1, TraesCS2D02G600600.2, TraesCS4A02G343600.1, TraesCS4A02G344300.1, TraesCS4A02G346700.2, TraesCS4A02G347400.1, TraesCS4A02G348000.1, TraesCS5A02G150600.1, TraesCS5A02G407900.2, TraesCS5B02G412800.1, TraesCS5B02G526100.1, TraesCS5B02G526400.2, TraesCS5B02G527200.1, TraesCS5B02G530600.1, TraesCS5D02G155700.3, TraesCS5D02G417800.1, TraesCS5D02G525800.1, TraesCS5D02G526500.1, TraesCS5D02G526700.1, TraesCS5D02G527300.1, TraesCS5D02G527400.1, TraesCS5D02G529400.1, TraesCS7A02G393200.1, TraesCSU02G062100.2
Poaceae Zoysia japonica 1 nbis-gene-5246
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