Basic Information
Locus ID:
Chr0G002380
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000273 | 134075 | 149572 | + | Chr0G002380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 233 | 557 | 1.06635E-168 | - |
| CDD | cd00121 | MATH | 91 | 208 | 1.26708E-36 | IPR002083 |
| Pfam | PF00917 | MATH domain | 97 | 217 | 2.3E-19 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 235 | 552 | 1.3E-47 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 691 | 780 | 7.3E-13 | IPR024729 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 92 | 221 | 6.7E-39 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 230 | 582 | 2.16E-93 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 680 | 778 | 1.5E-17 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 89 | 231 | 8.4E-51 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 232 | 556 | 1.7E-86 | - |
| SMART | SM00061 | math_3 | 92 | 196 | 1.8E-19 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 90 | 215 | 37.880478 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 235 | 555 | 40.074657 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 471 | 488 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 236 | 251 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 838 | 883 | - | - |
| Coils | Coil | Coil | 571 | 591 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_034607285.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Setaria viridis] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9UMG0 | ubiquitinyl hydrolase 1 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_27399 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology