Basic Information
Locus ID:
Chr09G026680
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000009 | 57138900 | 57143965 | + | Chr09G026680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 697 | 737 | 3.64983E-20 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 695 | 741 | 2.1E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 697 | 743 | 3.03E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 683 | 748 | 3.0E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 698 | 737 | 10.77793 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 359 | - | - |
| Coils | Coil | Coil | 73 | 93 | - | - |
| Coils | Coil | Coil | 627 | 647 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039783526.1 | uncharacterized protein LOC120650437 isoform X2 [Panicum virgatum] | 0 |
| Q24746 | Protein neuralized OS=Drosophila virilis OX=7244 GN=neur PE=4 SV=1 | 0 | |
| TrEMBL | A0A5J9UWH3 | RING-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_19136 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology