Basic Information
Locus ID:
Chr09G026650
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000009 | 57117908 | 57126589 | + | Chr09G026650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 88 | 227 | 4.79438E-30 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 686 | 727 | 5.02079E-23 | - |
| Pfam | PF04564 | U-box domain | 683 | 741 | 6.6E-12 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 673 | 741 | 5.21E-19 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 396 | 489 | 6.3E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 681 | 741 | 2.1E-20 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 685 | 740 | 3.4E-15 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 681 | 741 | 30.147911 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 621 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 593 | 621 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 570 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 390 | - | - |
| Coils | Coil | Coil | 321 | 341 | - | - |
| Coils | Coil | Coil | 363 | 383 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_025799164.1 | U-box domain-containing protein 33-like isoform X1 [Panicum hallii] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2T7FE35 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G443600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH07.3789, BH07.3609, CH07.316, CH07.3685 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0151050, gene-QOZ80_2BG0206470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0478990.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_037771 |
| Poaceae | Oryza coarctata | 2 | Oco03G025760, Oco04G026230 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g57700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G324800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604597, Pt_Chr0605662 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G026650, Chr13G000470 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G339600, Tel5E01G341900 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC5AG032910, gene_TRIDC5AG033150 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G203900.1, TraesCS5A02G205800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb190970_P005 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39767, nbis-gene-8270 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17452 |