Basic Information
Locus ID:
Chr09G026090
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Pentatricopeptide repeat domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000009 | 56576514 | 56580017 | - | Chr09G026090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 484 | 511 | 6.2E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 522 | 547 | 1.0 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 414 | 442 | 0.0088 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 626 | 651 | 0.28 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 448 | 477 | 1.2 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 381 | 407 | 0.0069 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 337 | 378 | 3.6E-6 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 320 | 611 | 3.92E-5 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 431 | 669 | 1.5E-29 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 292 | 430 | 1.3E-23 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 381 | 410 | 8.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 344 | 376 | 4.5E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 484 | 515 | 1.5E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 413 | 445 | 2.9E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 480 | 514 | 11.016164 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 515 | 549 | 8.549871 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 445 | 479 | 9.481582 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 410 | 444 | 10.325603 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 340 | 374 | 10.753093 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 375 | 409 | 10.654441 | IPR002885 |
| Coils | Coil | Coil | 601 | 621 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19520.1 | pentatricopeptide (PPR) repeat-containing protein. | 0 |
| RefSeq | XP_025792870.1 | pentatricopeptide repeat-containing protein At5g65560 [Panicum hallii] | 0 |
| Q8LEZ4 | Small ribosomal subunit protein mS77 (rPPR2) OS=Arabidopsis thaliana OX=3702 GN=NFD5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9V051 | PPR_long domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_20846 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22884 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9792 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014084 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g084340 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20801, Sbi_jg22962 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16834 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009317 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62012, Sgl66572 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000018675, gene:ENSEOMG00000019992 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0012480, CQ.Regalona.r1.7AG0012690 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30046570 |
| Apiaceae | Apium graveolens | 1 | Ag2G00269 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G010280 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703729 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.869.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G24160 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G19520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006936m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g17390.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g034270.2N, BniB06g017100.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1586 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1712 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g15730 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g33430 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.332 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002818, Pov_00013644 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37539, Lb5G27091 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.2571, BH07.2376, CH07.2453 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0137150, gene-QOZ80_2BG0192760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0593640.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_023560 |
| Poaceae | Oryza coarctata | 2 | Oco03G015100, Oco04G015580 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g39820.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G193400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204565, Pt_Chr0204621 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G026090, Chr13G007790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G424900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG034000, gene_TRIDC6BG040540 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G219800.1, TraesCS6B02G249200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb246850_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18560 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16652 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG06.1376, evm.TU.LG11.752, evm.TU.LG11.761 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g35250 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1934 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14392, nbisL1-mrna-9026 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4183 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21638 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.79 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017450 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3015 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20277 |
| Salicaceae | Populus euphratica | 2 | populus_peu15228, populus_peu32890 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616750 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107026201, gene-LOC107026235 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.20642_chr11_-, STRG.14308_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2192 |
| Zosteraceae | Zostera marina | 1 | Zosma03g13290.v3.1 |