Basic Information
Locus ID:
Chr09G024000
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000009 | 54754903 | 54760654 | - | Chr09G024000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 48 | 203 | 1.01616E-32 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 968 | 1009 | 3.23873E-23 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 676 | 921 | 3.3E-23 | IPR001245 |
| Pfam | PF04564 | U-box domain | 964 | 1035 | 8.7E-19 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 652 | 931 | 6.65E-41 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 960 | 1039 | 1.85E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 744 | 956 | 6.7E-26 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 649 | 743 | 2.0E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 962 | 1040 | 2.3E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 967 | 1030 | 9.7E-30 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 963 | 1037 | 36.392975 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 671 | 969 | 22.138803 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
| Coils | Coil | Coil | 366 | 386 | - | - |
| Coils | Coil | Coil | 394 | 414 | - | - |
| Coils | Coil | Coil | 607 | 648 | - | - |
| Coils | Coil | Coil | 536 | 563 | - | - |
| Coils | Coil | Coil | 571 | 598 | - | - |
| Coils | Coil | Coil | 472 | 506 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_014660103.1 | U-box domain-containing protein 33 isoform X1 [Setaria italica] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UY84 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_20354 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH07.2922, BH07.2744, CH07.2816 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0140170, gene-QOZ80_2BG0195840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0602150.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G017570, Oco04G018320 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g44610.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G223200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0205955 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G024000 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6AG037900 |
| Poaceae | Triticum aestivum | 2 | TraesCS6A02G245400.1, TraesCS6D02G227800.1 |
| Poaceae | Zea mays | 1 | Zm00001eb186880_P001 |