Basic Information
Locus ID:
Chr09G023570
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000009 | 54214442 | 54220478 | - | Chr09G023570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 140 | 175 | 6.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 301 | 335 | 0.0046 | IPR001680 |
| Pfam | PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 109 | 130 | 8.3E-5 | IPR000571 |
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 296 | 0.08 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 138 | 424 | 1.74E-46 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 106 | 130 | 1.06E-5 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 207 | 429 | 3.5E-35 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 135 | 197 | 6.3E-10 | IPR015943 |
| Gene3D | G3DSA:2.30.30.1190 | - | 103 | 134 | 2.5E-6 | - |
| SMART | SM00320 | WD40_4 | 340 | 383 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 259 | 296 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 423 | 59.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 299 | 336 | 9.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 136 | 175 | 8.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 252 | 10.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 105 | 131 | 3.9E-4 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 29 | 53 | 0.1 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 266 | 305 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 143 | 175 | 12.024679 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 143 | 184 | 15.086744 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 28 | 54 | 10.718223 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 105 | 132 | 15.562998 | IPR000571 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 283 | 297 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 162 | 176 | 4.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 323 | 337 | 4.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 283 | 297 | 4.8E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 104 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_002454483.1 | zinc finger CCCH domain-containing protein 17 [Sorghum bicolor] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A835FM84 | Zinc finger CCCH domain-containing protein 48 OS=Digitaria exilis OX=1010633 GN=HU200_008524 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology