Basic Information
Locus ID:
Chr09G022620
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000009 | 53260272 | 53263044 | - | Chr09G022620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 159 | 442 | 2.90266E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 268 | 303 | 6.0E-7 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 187 | 244 | 9.5E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 319 | 357 | 0.0073 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 407 | 442 | 7.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 147 | 444 | 1.57E-58 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 96 | 445 | 3.8E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 264 | 303 | 2.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 403 | 442 | 8.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 222 | 260 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 180 | 219 | 4.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 360 | 400 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 315 | 357 | 0.0029 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 187 | 228 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 187 | 224 | 8.729241 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 410 | 443 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 410 | 443 | 10.574686 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 271 | 305 | 11.708317 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 271 | 312 | 14.78598 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 290 | 304 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 429 | 443 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_004953534.1 | cell division cycle 20.2, cofactor of APC complex [Setaria italica] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VA43 | ANAPC4_WD40 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_24011 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology