Basic Information
Locus ID:
Chr09G020350
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000009 | 51185536 | 51188981 | - | Chr09G020350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 179 | 221 | 2.6856E-17 | - |
| Pfam | PF13639 | Ring finger domain | 178 | 221 | 2.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 161 | 224 | 4.48E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 143 | 224 | 4.7E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 179 | 220 | 1.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 179 | 221 | 12.326995 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039773560.1 | NEP1-interacting protein-like 2 [Panicum virgatum] | 0 |
| Q8LBA0 | NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9UYV8 | RING-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_20000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13802 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000814 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g114340 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31085, Sbi_jg58187 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25801 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004661 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54732, Sgl60033 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005301, gene:ENSEOMG00000022284 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30144370 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G007780 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702740 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G08128 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G74410.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019108m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g29570.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g052890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1744 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g12590 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.640 |
| Poaceae | Echinochloa crus-galli | 5 | AH06.920, AH07.3449, BH07.3278, CH06.1047, CH07.3329 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0145430, gene-QOZ80_2BG0200870 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0615480.1, HORVU.MOREX.r3.7HG0666820.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_024893 |
| Poaceae | Oryza coarctata | 4 | Oco03G021400, Oco04G022030, Oco11G005990, Oco12G006030 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g50990.1, LOC_Os06g12560.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G276300, gene-BS78_10G097700 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0203339, Pt_Chr0301176, Pt_Chr0404757, Pt_Chr0603412 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr06G002420, Chr09G020350, Chr11G019460, Chr13G004510 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G551300, Tel7E01G350200 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2BG008010, gene_TRIDC6AG046380 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS2B02G019500.1, TraesCS2D02G005100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb194620_P002, Zm00001eb254430_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-35141, nbis-gene-8733 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14412, Zma_g31635 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2664, evm.TU.LG14.1798 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.861 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14540 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20301 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12450 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.12 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008850 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-849 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19366_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2366 |