Basic Information
Locus ID:
Chr09G019010
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000009 | 49880732 | 49881885 | - | Chr09G019010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 191 | 233 | 2.35929E-26 | - |
| Pfam | PF13639 | Ring finger domain | 191 | 233 | 1.7E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 15 | 48 | 3.3E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 172 | 236 | 2.21E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 155 | 239 | 1.2E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 192 | 232 | 6.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 192 | 233 | 12.371254 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 138 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004954037.1 | probable E3 ubiquitin-protein ligase RHC1A [Setaria italica] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | K3YUC0 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101781794 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology