Basic Information
Locus ID:
Chr09G016760
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000009 | 47483676 | 47493571 | + | Chr09G016760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 512 | 797 | 1.87072E-64 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 559 | 590 | 3.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 764 | 797 | 0.1 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 681 | 714 | 0.0011 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 1.2E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 598 | 634 | 4.7E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 509 | 797 | 4.95E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 352 | 643 | 2.8E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 644 | 797 | 5.5E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 551 | 590 | 1.2E-4 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0065 | IPR006594 |
| SMART | SM00320 | WD40_4 | 637 | 673 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 509 | 548 | 7.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 717 | 756 | 0.68 | IPR001680 |
| SMART | SM00320 | WD40_4 | 676 | 714 | 9.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 594 | 634 | 1.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 758 | 797 | 8.0E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 765 | 797 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 601 | 643 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 683 | 723 | 9.672996 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 558 | 590 | 12.145943 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 601 | 635 | 8.597424 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.12961 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 765 | 797 | 12.209223 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 558 | 590 | 10.126507 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 421 | - | - |
| Coils | Coil | Coil | 369 | 389 | - | - |
| Coils | Coil | Coil | 79 | 99 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_039778702.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 [Panicum virgatum] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UV35 | LisH domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_19249 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology