Basic Information
Locus ID:
Chr09G014910
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000009 | 45079827 | 45081111 | + | Chr09G014910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 7 | 49 | 2.11987E-21 | - |
| Pfam | PF04564 | U-box domain | 3 | 77 | 1.9E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 2 | 82 | 1.96E-27 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 122 | 386 | 2.26E-15 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 95 | 399 | 5.5E-13 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 81 | 1.8E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 6 | 72 | 8.6E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 2 | 79 | 36.985638 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 175 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_021315860.1 | E3 ubiquitin-protein ligase PUB23 [Sorghum bicolor] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1Z5RNY7 | RING-type E3 ubiquitin transferase OS=Sorghum bicolor OX=4558 GN=SORBI_3004G169200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology