Basic Information
Locus ID:
Chr09G013480
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000009 | 43501332 | 43507143 | + | Chr09G013480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 205 | 476 | 5.6E-44 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 182 | 477 | 2.02E-76 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 279 | 496 | 2.4E-70 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 173 | 278 | 1.4E-38 | - |
| SMART | SM00220 | serkin_6 | 202 | 476 | 1.8E-26 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 202 | 489 | 36.597885 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 325 | 337 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 208 | 230 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71830.1 | somatic embryogenesis receptor-like kinase 1. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later | 0 |
| RefSeq | XP_025805137.1 | LRR receptor kinase SERK2 [Panicum hallii] | 0 |
| Q7XV05 | LRR receptor kinase SERK2 OS=Oryza sativa subsp. japonica OX=39947 GN=SERK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6QGQ3 | Somatic embryogenesis receptor kinase 1-like OS=Panicum miliaceum OX=4540 GN=C2845_PM12G18250 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology