Basic Information
Locus ID:
Chr09G011890
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
ARID/BRIGHT DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000009 | 41317863 | 41324521 | - | Chr09G011890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 255 | 319 | 2.62048E-17 | - |
| CDD | cd16872 | ARID_HMGB9-like | 45 | 130 | 2.92393E-40 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 255 | 322 | 4.1E-14 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 49 | 130 | 6.9E-19 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 246 | 326 | 6.94E-20 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 40 | 143 | 1.44E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 35 | 151 | 2.0E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 238 | 332 | 9.1E-21 | IPR036910 |
| SMART | SM00398 | hmgende2 | 254 | 323 | 6.9E-17 | IPR009071 |
| SMART | SM01014 | ARID_2 | 40 | 130 | 7.8E-27 | - |
| SMART | SM00501 | bright_3 | 44 | 135 | 8.7E-28 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 255 | 322 | 14.571702 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 43 | 134 | 25.569647 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 177 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_039789598.1 | high mobility group B protein 15-like [Panicum virgatum] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835KNC7 | ARID domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_010568 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology