Basic Information
Locus ID:
Chr09G011260
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Encoded by
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000009 | 40243466 | 40244372 | + | Chr09G011260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05699 | hAT family C-terminal dimerisation region | 37 | 102 | 1.6E-9 | IPR008906 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 39 | 107 | 4.4E-15 | IPR012337 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 219 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025820838.1 | uncharacterized protein LOC112896933 [Panicum hallii] | 0 |
| TrEMBL | A0A811P170 | Dimer_Tnp_hAT domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS25660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH07.1505 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0386670 |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.2HG0133620.1.CDS1 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr03G008640, Chr06G020320, Chr09G011090, Chr09G011260 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1B02G452600.1.cds1, TraesCS3A02G198500.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb170800_P001, Zm00001eb221320_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-24547, nbis-gene-35634, nbis-gene-56951 |