Basic Information
Locus ID:
Chr09G011030
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000009 | 39632969 | 39634165 | + | Chr09G011030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 174 | 245 | 2.35784E-5 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 105 | 165 | 2.06914E-12 | - |
| Pfam | PF00240 | Ubiquitin family | 105 | 166 | 4.8E-14 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 24 | 91 | 3.0E-12 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 247 | 300 | 2.0E-5 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 163 | 247 | 1.98E-10 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 93 | 166 | 9.26E-18 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 8 | 91 | 1.76E-13 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 23 | 92 | 2.1E-15 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 93 | 169 | 1.9E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 171 | 244 | 7.2E-9 | - |
| SMART | SM00213 | ubq_7 | 172 | 247 | 0.91 | IPR000626 |
| SMART | SM00213 | ubq_7 | 95 | 167 | 1.3E-10 | IPR000626 |
| SMART | SM00213 | ubq_7 | 22 | 92 | 2.6E-8 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 95 | 166 | 18.301432 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 22 | 92 | 14.272985 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 172 | 244 | 9.634824 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 127 | 147 | 2.6E-8 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 106 | 126 | 2.6E-8 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 148 | 169 | 2.6E-8 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09790.1 | ubiquitin 8. encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions. | 0 |
| RefSeq | XP_004982880.1 | polyubiquitin [Setaria italica] | 0 |
| Q39256 | Polyubiquitin 8 OS=Arabidopsis thaliana OX=3702 GN=UBQ8 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0A8ZN82 | Polyubiquitin-like OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH01.1773, BH01.2094, CH01.2025, CH01.2026, CH01.2027 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127800, gene-QOZ80_2BG0183260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0042620.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_017527, gene-QYE76_067660 |
| Poaceae | Oryza coarctata | 2 | Oco19G005960, Oco20G005870 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g33620.1, LOC_Os11g18670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G206400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G011030, Chr13G014190 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG028140 |
| Poaceae | Triticum aestivum | 2 | TraesCS1B02G171700.1, TraesCS1D02G151600.1 |
| Poaceae | Zea mays | 1 | Zm00001eb045950_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19226 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16186 |