Basic Information
Locus ID:
Chr09G006910
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000009 | 18913707 | 18929733 | + | Chr09G006910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01765 | FERM_F0_F1 | 162 | 224 | 0.00512255 | - |
| CDD | cd02674 | Peptidase_C19R | 743 | 906 | 1.53906E-58 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 313 | 906 | 1.7E-83 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 41 | 137 | 1.6E-21 | IPR006615 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 310 | 908 | 6.08E-109 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 15 | 137 | 2.22E-24 | IPR035927 |
| Gene3D | G3DSA:3.10.20.90 | - | 151 | 237 | 1.8E-9 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 669 | 916 | 2.6E-57 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 14 | 150 | 6.1E-31 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 298 | 545 | 5.8E-65 | - |
| SMART | SM00695 | dusp | 37 | 140 | 5.1E-19 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 312 | 909 | 58.085155 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 18 | 137 | 18.018965 | IPR006615 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 851 | 868 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 313 | 328 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 98 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10570.1 | ubiquitin-specific protease 9. encodes a ubiquitin-specific protease family member, UBP9. | 0 |
| RefSeq | XP_002464716.1 | ubiquitin carboxyl-terminal hydrolase 9 [Sorghum bicolor] | 0 |
| Q9ZSB5 | Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811MHL3 | Ubiquitin carboxyl-terminal hydrolase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS2823 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology