Basic Information
Locus ID:
Chr09G006770
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Chromo (CHRromatin Organisation MOdifier) domain
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000009 | 17509151 | 17534022 | - | Chr09G006770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 424 | 477 | 1.0323E-22 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 425 | 477 | 2.3E-11 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 484 | 576 | 3.7E-7 | IPR001525 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 752 | 811 | 9.9E-13 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 335 | 814 | 1.11E-54 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 411 | 486 | 4.76E-15 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 290 | 606 | 1.5E-113 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 674 | 780 | 2.9E-68 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 781 | 832 | 2.9E-68 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 132 | 289 | 3.6E-39 | IPR043151 |
| SMART | SM00298 | chromo_7 | 424 | 481 | 1.0E-10 | IPR000953 |
| SMART | SM00439 | BAH_4 | 180 | 304 | 0.0056 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 335 | 821 | 27.593971 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 425 | 476 | 13.118601 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 180 | 304 | 10.97259 | IPR001025 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 446 | 466 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 493 | 505 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 336 | 352 | 4.9E-5 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 536 | 550 | 4.9E-5 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 55 | - | - |
| Coils | Coil | Coil | 59 | 79 | - | - |
| Coils | Coil | Coil | 91 | 111 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80740.1 | chromomethylase 1. ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation. | 0 |
| RefSeq | XP_025793455.1 | DNA (cytosine-5)-methyltransferase 3 [Panicum hallii] | 0 |
| Q8LPU5 | DNA (cytosine-5)-methyltransferase 3 OS=Zea mays OX=4577 GN=DMT105 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9V7C0 | Chromomethylase 3 OS=Eragrostis curvula OX=38414 GN=EJB05_23142 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology