Basic Information
Locus ID:
Chr09G006510
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000009 | 15968830 | 15970447 | - | Chr09G006510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 122 | 166 | 4.33704E-28 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 123 | 164 | 1.6E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 121 | 177 | 2.87E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 178 | 1.5E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 124 | 164 | 4.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 124 | 165 | 13.72853 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 139 | 148 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 409 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039784934.1 | uncharacterized protein LOC120651507 [Panicum virgatum] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9HN42 | RING-type E3 ubiquitin transferase OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH01.2747, BH01.3079 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0118630, gene-QOZ80_2BG0172380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0053920.2.CDS3 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012989 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G270100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503437, Pt_Chr0503483 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G021590, Chr09G006510, Chr13G018190, Chr15G017590 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G342200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG030050, gene_TRIDC1BG035550 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G198000.1, TraesCS1B02G212700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb025340_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39354 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13020 |